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Science

During deep sleep, the brain washes away waste products that increase the risk for Alzheimer’s disease

Benjamin Larweh
Last updated: August 15, 2025 10:14 pm
Benjamin Larweh
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Researchers at Boston University recently found that just one night of disrupted deep sleep increased beta-amyloid levels by 30% in healthy adults.

These are the same proteins that form the sticky plaques found in Alzheimer’s patients’ brains.

“Think of your brain as a restaurant,” explains Dr. Maiken Nedergaard, a neuroscientist who pioneered research in this field.

“During the day, it’s serving customers—processing information, creating memories. At night, when the customers leave, the cleaning crew comes in to prepare for the next day.”

The Brain’s Secret Plumbing System

This cleaning crew is called the glymphatic system—a recently discovered network that acts like a sanitation department for your brain.

During deep sleep, the spaces between brain cells expand by up to 60%. This allows cerebrospinal fluid to rush through and wash away accumulated waste products, including beta-amyloid and tau proteins.

The fascinating part? This system only becomes fully active when you’re in deep, slow-wave sleep.

“It’s like having tiny janitors that only work the night shift,” says Dr. Laura Lewis of Boston University. “And they’re extremely efficient—removing up to twice as much toxic waste during sleep as when you’re awake.”

The Sleep-Alzheimer’s Connection

The implications are profound. Studies consistently show that poor sleep quality and insufficient deep sleep correlate with higher risk of Alzheimer’s disease.

A landmark study published in Science found that older adults who regularly got less than six hours of sleep had significantly higher levels of brain amyloid deposits compared to those who slept seven to eight hours.

Even more telling: people with sleep disorders like sleep apnea—which disrupts deep sleep—face a 30-40% higher risk of developing dementia.

Why You Should Care (Even If You’re Young)

Most people don’t worry about Alzheimer’s until later in life. But the brain changes that lead to Alzheimer’s begin 15-20 years before the first symptoms appear.

That means the sleep habits you establish in your 30s and 40s could significantly impact your brain health in your 60s and 70s.

The Surprising Truth About Sleep Quality

Here’s something that might challenge what you believe about sleep: more sleep isn’t necessarily better—it’s the quality that counts.

Many people assume that simply spending more time in bed will protect their brain health. But research suggests that’s not the case.

The truth? Just one hour of high-quality deep sleep can be more beneficial than eight hours of fragmented, shallow sleep.

This pattern-breaking insight comes from a study at UC Berkeley, where researchers found that the amount of slow-wave sleep—not total sleep time—predicted lower levels of brain amyloid accumulation.

“Many people pride themselves on needing just five or six hours of sleep,” notes Dr. Matthew Walker, sleep scientist and author. “But the research is clear: regularly cutting sleep short decimates the brain’s ability to clear out these toxic proteins.”

How Deep Sleep Works Its Magic

During deep sleep, several critical processes occur simultaneously:

Brain waves slow down dramatically, with neurons firing in a synchronized pattern that creates powerful “slow waves” visible on EEG recordings.

Blood flow in the brain changes, temporarily decreasing in certain regions to allow cerebrospinal fluid to flow more freely.

The glymphatic system kicks into high gear, with astrocytes (star-shaped brain cells) shrinking to create wider channels for fluid flow.

Growth hormone releases at peak levels, promoting cell repair throughout the body, including brain tissue.

“It’s an incredibly coordinated symphony,” explains Dr. Charles Czeisler of Harvard Medical School. “Every aspect of this process depends on achieving and maintaining proper deep sleep.”

The Modern Sleep Crisis

Despite its importance, deep sleep is precisely what most Americans aren’t getting enough of.

The average person now sleeps 6.8 hours per night—down from 9 hours a century ago. More troubling is that the quality of that sleep has deteriorated dramatically.

Exposure to blue light from screens, irregular sleep schedules, alcohol consumption, and rising rates of sleep disorders all disrupt the deep sleep stages essential for brain cleansing.

“We’re facing an epidemic of sleep deprivation,” says Dr. Eve Van Cauter of the University of Chicago. “And the consequences for brain health could be severe.”

Your Brain on Poor Sleep

When deep sleep gets disrupted, the consequences go beyond feeling tired the next day.

A single night of poor sleep can increase beta-amyloid production by 30% and impair the brain’s ability to clear these toxic proteins.

Over time, this creates a dangerous cycle: accumulated amyloid disrupts sleep quality, which further reduces clearance, accelerating the build-up of these harmful proteins.

Research from Washington University in St. Louis found that people who reported poor sleep quality had more amyloid plaques visible on brain scans and performed worse on cognitive tests.

Small Changes, Big Brain Benefits

The good news? Even modest improvements in sleep quality can enhance brain cleaning.

Establishing a consistent sleep schedule—going to bed and waking up at the same time daily—can increase deep sleep time by up to 25%.

Creating a cool, dark sleeping environment improves deep sleep quality. The optimal bedroom temperature for deep sleep is around 65°F (18°C).

Avoiding alcohol before bed makes a significant difference. While alcohol might help you fall asleep initially, it reduces deep sleep by up to 40%.

Exercise—particularly in the morning or afternoon—can increase deep sleep duration by up to 30%. Just avoid vigorous workouts within 2-3 hours of bedtime.

“These aren’t difficult changes,” explains sleep specialist Dr. Rafael Pelayo of Stanford University. “But they can dramatically improve your brain’s nightly cleaning cycle.”

Beyond Alzheimer’s: Other Benefits of Deep Sleep

The brain’s cleaning system doesn’t just target Alzheimer’s-related proteins. During deep sleep, your brain also removes other potentially harmful substances:

Inflammatory molecules that contribute to brain fog and cognitive decline

Metabolic waste products that can damage neurons

Oxidative stress compounds that accelerate brain aging

“Deep sleep is like a reset button for your brain,” says neuroscientist Dr. Jessica Payne. “It clears away the day’s accumulated cellular garbage and allows your brain to start fresh.”

The Future of Sleep Medicine

Recognizing sleep’s crucial role in brain health has sparked innovative research into sleep enhancement technologies and therapies.

Scientists are developing targeted sound stimulation techniques that can boost slow-wave sleep without medications. These use precisely timed auditory cues to enhance the brain’s natural slow waves.

Novel wearable devices now track sleep quality with increasing accuracy, helping people understand their sleep patterns and identify problems.

Pharmaceutical companies are researching medications that specifically enhance deep sleep without the side effects of traditional sleep aids.

“The field is moving toward precision sleep medicine,” explains Dr. Phyllis Zee of Northwestern University. “We’re developing tools to optimize each individual’s sleep quality based on their unique physiology.”

Sleep as Preventive Medicine

As research continues to establish the link between sleep and brain health, medical professionals are beginning to view quality sleep as essential preventive medicine.

Leading Alzheimer’s research centers now include sleep assessments in their standard protocols, recognizing that sleep quality may be as important as genetic factors in determining disease risk.

“Twenty years ago, we focused almost exclusively on genetics when thinking about Alzheimer’s risk,” notes Dr. David Holtzman, Chairman of Neurology at Washington University. “Now we understand that sleep quality is one of the most powerful modifiable risk factors.”

Making Sleep a Priority

Despite mounting evidence, many people still view sleep as a luxury rather than a necessity.

“We’ve created a society that doesn’t value sleep,” observes Dr. Matthew Walker. “We celebrate people who sacrifice sleep for work, not realizing they’re sacrificing their brain health in the process.”

Changing this mindset requires recognizing that quality sleep isn’t indulgent—it’s essential maintenance for your most valuable organ.

The Bottom Line

The discovery of the brain’s cleaning system represents one of the most significant breakthroughs in our understanding of brain health and Alzheimer’s prevention.

By prioritizing deep, quality sleep, you’re not just refreshing your mind for the next day—you’re activating a sophisticated maintenance system that helps protect your brain for decades to come.

“If people understood that sleep was their brain’s built-in defense against Alzheimer’s disease, they might start taking it more seriously,” says Dr. Nedergaard. “The science is clear: deep sleep isn’t a luxury—it’s brain maintenance that none of us can afford to skip.”

References

  1. Xie, L., Kang, H., Xu, Q., Chen, M. J., Liao, Y., Thiyagarajan, M., … & Nedergaard, M. (2013). Sleep drives metabolite clearance from the adult brain. Science, 342(6156), 373-377.
  2. Holth, J. K., Fritschi, S. K., Wang, C., Pedersen, N. P., Cirrito, J. R., Mahan, T. E., … & Holtzman, D. M. (2019). The sleep-wake cycle regulates brain interstitial fluid tau in mice and CSF tau in humans. Science, 363(6429), 880-884.
  3. Shokri-Kojori, E., Wang, G. J., Wiers, C. E., Demiral, S. B., Guo, M., Kim, S. W., … & Volkow, N. D. (2018). β-Amyloid accumulation in the human brain after one night of sleep deprivation. Proceedings of the National Academy of Sciences, 115(17), 4483-4488.
  4. Walker, M. P. (2017). Why we sleep: Unlocking the power of sleep and dreams. Simon and Schuster.
  5. Ju, Y. E. S., Lucey, B. P., & Holtzman, D. M. (2014). Sleep and Alzheimer’s disease pathology—a bidirectional relationship. Nature Reviews Neurology, 10(2), 115-119.

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